All functions

cleanup_by_species()

Cleanup species function

clean_and_resample()

Clean and Resample Species Data

include_or_exclude()

Include or Exclude

join_dfs()

Join Data Frames

noaa_afsc_age

AFSC age composition estimate data

noaa_afsc_ai_pred_grid_depth

Prediction grid for AI survey

noaa_afsc_biomass

AFSC biomass and population estimates data

noaa_afsc_bs_pred_grid_depth

Prediction grid for BS survey

noaa_afsc_catch

Combined AFSC catch, haul, and species data from FOSS

noaa_afsc_ebs_pred_grid_depth

Prediction grid for EBS survey

noaa_afsc_goa_pred_grid_depth

Prediction grid for GOA survey

noaa_afsc_length

AFSC length (size) estimate data

noaa_afsc_nbs_pred_grid_depth

Prediction grid for NBS survey

noaa_nefsc_catch

Combined NEFSC catch, haul, and species data from FOSS

noaa_nefsc_pred_grid_depth

Prediction grid for NWA survey

noaa_nwfsc_bio

Combined NWFSC biological (length and age composition), haul, and species data

noaa_nwfsc_catch

Combined NWFSC catch, haul, and species data

noaa_nwfsc_pred_grid_depth

Prediction grid for NWFSC survey

plot_results()

Plot Results and Save Figures

resample_tests()

Resample Tests and Run SDM Processing

tow_fn()

Tow Function

wrapper_sdmtmb()

Species distribution model function using sdmTMB

wrapper_surveyIndex()

Species distribution model function using surveyIndex GAM model

wrapper_tinyVAST()

Species distribution model function using tinyVAST