Pkgdown site for organizing figures and tables for the Mixed Effects Residual Project

Manuscript:

• Google Doc Draft (co-authors only)
• Pkgdown Repo:
  • Tables
  • Figures:
    • Methods
    • MLEs
    • Overall Results
    • Temporal Results
    • Spatial Results
    • Phylogenetic Results -OSA Tutorial

Mixed Effects Residual Project
Repo Structure

• code: Demo code and test snippets

• R: R scripts used to run models

  • make_plots: Initial code used to make plots. Final code now moved to docs/

  • model_fns: Core functions used to run model iterations

  • resid_fns: Functions used to calculate residuals

  • run_analysis: Script used to run analysis in parallel

  • run_sample_sizes: Script used to run models for increasing sample sizes

  • sim_data: Functions used to simulate data

  • startup: Prepares the R environment for the analysis

  • utils: Helper functions

• results: Saved results as .RMD files

• src: TMB models

This is an ongoing analysis, please check back later for more information.