Plot recruitment deviations

Plot recruitment deviations

plot_recruitment_deviations(
  dat,
  module = NULL,
  era = NULL,
  interactive = TRUE,
  make_rda = FALSE,
  figures_dir = getwd(),
  ...
)

Arguments

dat

Data frame or list. A tibble or named list of tibbles (input as list()) returned from convert_output.

If inputting a list of tibbles, the first tibble's reference point defined in ref_line is used to plot a reference line or calculate relative spawning biomass.

module

Character vector. (Optional) Module name found in dat$module_name. If selecting >1 module, place them in a vector like c("module1", "module2").

Default: NULL

If the interactive and >1 module_name is found, user will select the module_name in the console. @seealso filter_data()

era

String. Era of data.

Default: "time"

Options: "early", "time", "fore" (forecast), or NULL (all data)

interactive

Logical. TRUE/FALSE; indicate whether the environment is interactive.

Default: FALSE

make_rda

Logical. TRUE/FALSE; indicate whether to save the object and make an automated caption and alternative text in the form of an rda object. If TRUE, the rda will be exported to the folder indicated in the argument "figures_dir".

Default: FALSE.

figures_dir

Path. Path to the "figures" folder.

Default: getwd()

The folder is created within the path if it does not exist.

...

Arguments called from geom_line or geom_point

Value

A plot showing recruitment deviations relative to one, over time.

Details

The input is from an assessment model output file translated to a standardized output (convert_output). There are options to return a ggplot2 object or export an .rda object containing associated caption and alternative text for the figure.

Note

All plotting functions automatically recognize indexing variables and will use them in groupings and/or facetting.

See also

convert_output(), plot_error(), filter_data(), process_data(), export_kqs(), insert_kqs(), create_rda()

Examples

plot_recruitment_deviations(
  dat = stockplotr:::example_data,
  interactive = FALSE,
  size = 1.5
)
#> ! Multiple module names found in data. 
#> ℹ Environment not interactive. Selecting PARAMETERS.

plot_recruitment_deviations(
  dat = stockplotr:::example_data,
  era = "early",
  interactive = FALSE,
  shape = 2
)
#> ! Multiple module names found in data. 
#> ℹ Environment not interactive. Selecting PARAMETERS.