Convert Output

Format stock assessment output files to a standardized format.

convert_output(file, model = NULL, fleet_names = NULL, save_dir = NULL)

Arguments

file

Path. Assessment model output file path

model

String. Assessment model used in evaluation

Default: NULL

Options: "ss3", "bam", "fims", "rceattle"

fleet_names

Character vector. Names of fleets in the assessment model as shortened in the output file. If fleet names are not properly read, then indicate the fleets names as an acronym in a vector

Default: NULL

save_dir

Path. File path to save the converted output file.

Default: NULL

Value

A reformatted and standardized version of assessment model results for application in building a stock assessment reports and to easily adapt results among regional assessments.

Details

The resulting object is simply a transformed and machine readable version of a model output file. Converted data frame is always returned. It will also be saved if save_dir is not NULL.

Author

Samantha Schiano

Examples

if (FALSE) { # \dontrun{
convert_output(
  file = here::here("model1", "Report.sso"),
  model = "ss3",
  fleet_names = c("TWL", "NONTWL"),
  save_dir = here::here("standard_output.rda")
)
} # }